PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_14A81F225.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YC
Protein Properties Length: 281aa    MW: 29627.7 Da    PI: 10.789
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_14A81F225.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC25.62.6e-081882662098
                  NF-YC  20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                            ++P+ar++ +++  +   +   e+  l+ ka elf+  ++  +  +a + +++++   ++++av + + ++fl d vp 
  Traes_4AL_14A81F225.1 188 SFPMARVRLLMRDKDATIRSNNETVFLVNKASELFLEVFAKDAHQNALKERKKSITYENLSTAVCKEKRYKFLSDFVPL 266
                            79******99997776667778899999*******98888899999999***************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.24E-13187266IPR009072Histone-fold
PfamPF008081.3E-9188251IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.7E-17189265IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGDTAATPKK KEKKGGEAAE PGSGSGKQEP SGEAGKPKPK PTPKKAKQQA SDGAAKETPS  60
KRKRDDAGEP QPQKSAKSAK KVDEATPTKK KQASSGGAEK ATTPSKTPQK KEAKSAKKSP  120
GKAEKATPTK KQQASGGPEK ATPSKRKHGD LESPKAAKSG QNGSSPAKKQ KGKAAGAAPV  180
AAEPGTCSFP MARVRLLMRD KDATIRSNNE TVFLVNKASE LFLEVFAKDA HQNALKERKK  240
SITYENLSTA VCKEKRYKFL SDFVPLRVTA GDALKAVVKE P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14047PTPKKAKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3683111e-124AK368311.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2071P07.
GenBankAK3741801e-124AK374180.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3056O15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232191.11e-65PREDICTED: histone H1.3
TrEMBLW5DLR40.0W5DLR4_WHEAT; Uncharacterized protein
STRINGBRADI1G01300.13e-65(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128261922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.17e-21nuclear factor Y, subunit C10
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]